Hotels in Henderson Harbor

Q: Where should I stay in Henderson Harbor if I'm looking for an affordable accommodation?

An inexpensive option worth considering is The GillHouse .

Where to?

Dates

April 2026

13

May 2026

I'm traveling for business

Free cancellation options if plans change

Earn rewards on every night you stay

Save more with Member Prices

Check prices for these dates

Tonight

Tomorrow

This weekend

Next weekend

Where to stay in Henderson Harbor?

The GillHouse

Henderson Harbor

CNY990 total

includes taxes & fees

May 1 - May 2

Studio Suite, 1 King Bed, Non Smoking | Desk, iron/ironing board, free WiFi, bed sheets

Days Inn by Wyndham Watertown Fort Drum

Calcium

CNY538 total

includes taxes & fees

Apr 30 - May 1

Quality Inn & Suites Watertown Fort Drum

Calcium

CNY509 total

includes taxes & fees

Apr 26 - Apr 27

Studio Suite, 2 Queen Beds | Premium bedding, individually decorated, individually furnished, desk

Candlewood Suites Watertown Fort Drum by IHG

Evans Mills

CNY819 total

includes taxes & fees

May 7 - May 8

Deluxe Single Room, 1 Queen Bed | Living area | TV

Nest Inn

Watertown

CNY461 total

includes taxes & fees

Apr 14 - Apr 15

Room, 1 Queen Bed | Premium bedding, free WiFi, bed sheets

Allen's Budget Motel

Watertown

CNY440 total

includes taxes & fees

Apr 14 - Apr 15

Royal Inn Motel

Watertown

CNY432 total

includes taxes & fees

Apr 14 - Apr 15

Indoor pool, open 2:00 PM to 9:30 PM, sun loungers

Adirondack Efficiencies Watertown

Watertown

CNY349 total

includes taxes & fees

Apr 14 - Apr 15

Desk, iron/ironing board, free cribs/infant beds, free WiFi

Comfort Inn & Suites Watertown - 1000 Islands

Watertown

CNY724 total

includes taxes & fees

May 3 - May 4

Hampton Inn Watertown

Watertown

CNY782 total

includes taxes & fees

Apr 30 - May 1

Travel Inn

Watertown

CNY523 total

includes taxes & fees

Apr 14 - Apr 15

Fairfield Inn & Suites Watertown Thousand Islands

Watertown

CNY1,092 total

includes taxes & fees

Apr 27 - Apr 28

Hilton Garden Inn Watertown/Thousand Islands

Watertown

CNY1,046 total

includes taxes & fees

May 3 - May 4

Holiday Inn Express Hotel & Suites Watertown-Thousand Island by IHG

Watertown

CNY925 total

includes taxes & fees

Apr 27 - Apr 28

Ramada by Wyndham Watertown/Thousand Islands NY

Watertown

CNY541 total

includes taxes & fees

Apr 26 - Apr 27

Premium Room, 1 Queen Bed with Sofa bed | Free WiFi

Harbor House Inn

Sackets Harbor

CNY1,341 total

includes taxes & fees

Apr 14 - Apr 15

View all properties

Go beyond your typical stay in Henderson Harbor

Family friendly

Pet friendly

Top landmarks in Henderson Harbor

Saiff Charters

Saiff Charters is 0.3 mi (0.5 km) from central Henderson Harbor, why not stop by during your stay.

See properties

Learn more about Henderson Harbor

Henderson Harbor is well-known for its attractions such as Lake Ontario and Saiff Charters.

See all hotels in Henderson Harbor

Check out reviews of Henderson Harbor hotels guests love

Ramada by Wyndham Watertown/Thousand Islands NY

8/10 Good

"Lots of parking. "

Quality Inn & Suites Watertown Fort Drum

6/10 Okay

"Hotel was OK. Clean enough, just very minimal and basic. It also has no elevator but two floors, so be aware of that if you have a lot of luggage. We asked to change to the first floor but were told the type of room we had (King with sofa?) was different than the rooms on the first floor - I am not sure of that. It just looked so outdated and unfinished. The toilet was small, of center and low to the ground. Bed was uncomfortable and on a very small and loud frame - the top Of the bed was also almost at an angle once you laid down. The TV was also outdated and not a smart tv. The floors were also weirdly uneven? Like there were parts that dipped in…"

Frequently asked questions

How much does a hotel room cost in Henderson Harbor?

You can discover great hotels in Henderson Harbor from CNY349 with properties to suit all budgets and needs. If you're after an affordable hotel in Henderson Harbor that meets all of your requirements, set your filters and then sort the results by "Price: low to high".

How can I find deals and earn rewards at Henderson Harbor hotels?

Discover great deals on Henderson Harbor hotel stays with Hotels.com. Take a look at hotel prices mid-week or during the low season as to find those off-peak deals. If you're up for a spontaneous trip, don't forget to check out our last-minute deals on Henderson Harbor hotels.

Can I book Henderson Harbor hotels with free cancellation?

It's easy to book a refundable Henderson Harbor hotel on Hotels.com. Simply filter hotels by "Property cancellation options" and select "Fully refundable property". Many hotels offer free cancellation, so you can receive a refund if you need to cancel. Some hotels do require cancelling more than 24 hours before check-in, so double-check your booking beforehand.

What accommodations do travelers like in Henderson Harbor?

Guests like The GillHouse.

Can I book refundable accommodations in Henderson Harbor?

If you want the flexibility to change your plans to Henderson Harbor, most hotels provide refundable* bookable rates. You can see these accommodations by searching our site and using the "fully refundable" filter to narrow down the results.

Where should I stay in Henderson Harbor if I'm looking for an affordable accommodation?

An inexpensive option worth considering is The GillHouse.

What will the weather in Henderson Harbor be like during my vacation?

July and August are typically the warmest months in Henderson Harbor when the average temp is 66°F. January and February are the coldest months when the average temperature is 27°F. October and July are the months with the most rain.

Why should I book my Henderson Harbor hotel with Hotels.com?

There are lots of reasons to book your Henderson Harbor trip with us: our free cancellations on selected hotels gives you flexibility, and with One Key™, our rewards program, you will be able to earn and use OneKeyCash™* on all eligible bookings such as hotels, car rentals, flights, vacation rentals and more on Hotels.com, Expedia and Vrbo.

Keep exploring

Book Hotels in Henderson Harbor on Hotels.com